This webpage provides code, documentation and examples to perform covalent docking simulations with AutoDock4 using the flexible residue method, as described in the paper:

Covalent docking using autodock: Two-point attractor and flexible side chain methods, Bianco, G., Forli, Forli, S., Goodsell, D., S., Olson, A., J. Protein Science.

For questions and help, please use the AutoDock mailing list or the AutoDock forum.